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    Items for Author "Floden, Evan"  

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    Showing 37 items.

    Collection Date Title Authors Bitstream
    [資訊管理學系] 會議論文 2024-08 scGHSOM: Hierarchical clustering and visualization of single-cell and CRISPR data using growing hierarchical SOM 郁方; Yu, Fang; Wen, Shang-Jung; Chang, Jia-Ming
    [資訊科學系] 期刊論文 2023-02 Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements 張家銘; Chang, Jia-Ming; Kahn, Tatyana G., Savitsky, Mikhail; Kuong, Chikuan; Jacquier, Caroline; Cavalli, Giacomo; Schwartz, Yuri B.
    [資訊科學系] 期刊論文 2022-12 Pattern recognition of topologically associating domains using deep learning 張家銘; Chang, Jia-Ming; Yang, Jhen Yuan
    [資訊科學系] 期刊論文 2022-02 HiCmapTools: a tool to access HiC contact maps 張家銘; Chang, Jia-Ming; Weng, Yi-Fu; Chang, Wei-Ting; Lin, Fu-An; Cavalli, Giacomo
    [資訊科學系] 期刊論文 2021-10 Circulating Exosomal miRNAs as Biomarkers in Epithelial Ovarian Cancer 張家銘; Chang, Jia-Ming; Shiao, Meng-Shin; Lertkhachonsuk, Arb-Aroon; Rermluk, Naparat; Jinawath, Natini
    [資訊科學系] 期刊論文 2019-12 MS2CNN: Predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks 張家銘; Chang, Jia-Ming; Lin, Yang Ming; Chen, Ching-Tai
    [資訊科學系] 期刊論文 2019-11 The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens 張家銘; Chang, Jia-Ming; organization, CAFA3
    [資訊科學系] 期刊論文 2019-02 Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability 張家銘; Chang, Jia-Ming; Floden, Evan W.; Herrero, Javier; Gascuel, Olivier; Tommaso, Paolo Di; Notredame, Cedric
    [資訊科學系] 期刊論文 2018-07 Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development Ogiyama, Yuki; Schuettengruber, Bernd; Papadopoulos, Giorgio L.; 張家銘; Chang, Jia-Ming; Cavalli, Giacomo
    [資訊科學系] 期刊論文 2018-02 TADs are 3D structural units of higher-order chromosome organization in Drosophila 張家銘; Szabo, Quentin; Jost, Daniel; Chang, Jia-Ming; Cattoni, Diego I.
    [資訊科學系] 期刊論文 2017-11 Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions 張家銘; Cattoni, Diego I.; González, Inma; Chang, Jia-Ming; Sexton, Thomas; Marc, A. Marti-Renom; Bantignies, Frédéric
    [資訊科學系] 期刊論文 2016-04 PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases 張家銘; Floden, Evan; Tommaso, Paolo Di; Chatzou, Maria; Magis, Cedrik; Notredame, Cedric; Chang, Jia-Ming
    [資訊科學系] 期刊論文 2015-11 Multiple sequence alignment modeling: methods and applications 張家銘; Chatzou, Maria; Magis, Cedrik; Chang, Jia-Ming; Kemena, Carsten; Bussotti, Giovanni; Erb, Ionas
    [資訊科學系] 期刊論文 2015-10 Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift 張家銘; Shiao, Meng-Shin; Chang, Jia-Ming; Fan, Wen-Lang; Lu, Mei-Yeh Jade; Notredame, Cedric; Fang, Shu
    [資訊科學系] 期刊論文 2015-07 TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction 張家銘; Chang, Jia-Ming; Tommaso, Paolo Di; Lefort, Vincent; Gascuel, Olivier; Notredame, Cedric
    [資訊科學系] 期刊論文 2014-10 Alignathon: A competitive assessment of whole genome alignment methods 張家銘
    [資訊科學系] 期刊論文 2014-06 TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction 張家銘; Chang, Jia-Ming; Tommaso, Paolo Di; Notredame, Cedric
    [資訊科學系] 期刊論文 2013-10 Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations Chang, J.-M.; 張家銘; Su, E.C.-Y.; Notredame, C.; Tang, C.Y.; Hsu, W.-L.; Sung, T.-Y.; Erb, I.; Taly, J.-F.
    [資訊科學系] 期刊論文 2012-12 Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing Su, Emily Chia-Yu; 張家銘; Hsu, Wen-Lian; Sung, Ting-Yi; Cheng, Cheng-Wei; Chang, Jia-Ming
    [資訊科學系] 期刊論文 2012-03 Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee 張家銘; Chang, Jia-Ming; Notredame, Cedric; Taly, Jean-François; Tommaso, Paolo Di
    [資訊科學系] 期刊論文 2012 Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee Chang, Jia-Ming; 張家銘; Notredame, Cedric; Taly, Jean-François; Tommaso, Paolo Di
    [資訊科學系] 期刊論文 2011-12 Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words 張家銘; Chang, Jia-Ming; Hsu*, Wen-Lian; Sung*, Ting-Yi; Notredame, Cédric; Lin, Hsin-Nan
    [資訊科學系] 期刊論文 2011-11 Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures Chang, Jia-Ming; 張家銘; Notredame, Cedric; Kemena, Carsten; Jose, Espinosa-Carrasco; Erb, Ionas; Tommaso, Paolo Di; Bussotti, Giovanni; Magis, Cedrik; Jean-Francois; Taly
    [資訊科學系] 期刊論文 2011-07 T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension Chang, Jia-Ming; 張家銘; Notredame, Cedric; Taly, Jean-François; Montanyola, Alberto; Orobitg, Miquel; Xenarios, Ioannis; Moretti, Sebastien; Tommaso, Di; Paolo
    [資訊科學系] 期刊論文 2011 Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words Lin, Hsin-Nan; Notredame, Cédric; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian; 張家銘
    [資訊科學系] 會議論文 2019-11 PSLCNN: Protein Subcellular Localization Prediction for Eukaryotes and Prokaryotes Using Deep Learning 張家銘; Chang, Jia-Ming; Chang, Che-Yu; Hsu, Tz-Wei
    [資訊科學系] 會議論文 2019-07 Identification of alternative splicing characteristic associated with clear-cell ovarian cancer from paired normal and tumor tissues 張家銘; HUANG, YU-TING; SHIAO, MENG-SHIN; TSAI, CHEN-AN; LAN, KUER-YUAN; LIN, CHIEH-HSI; JIANAWATH, NATINI
    [資訊科學系] 專書/專書篇章 2013-11 T-Coffee: tree-based consistency objective function for alignment evaluation 張家銘; Magis, Cedrik; Taly, Jean-François; Bussotti, Giovanni; Chang, Jia-Ming; Tommaso, Paolo Di; Erb, Ionas
    [財務管理學系] 學位論文 2018 台灣上市櫃公司房地產價值對借款與投資決策之影響 張家銘
    [第 28 屆國際資訊管理學術研討會] 會議論文 2017-05-13 應用決策樹於罹患慢性肝病預測之研究 陳振東; 邱冠榮; 李劭鎧; 張家銘
    [神經科學研究所] 會議論文 2018-03 NMDA Receptor Modulator Rescues Psychiatric Phenotypes in Mouse Model of Maternal Immune Activation 陳紹寬; Chen, Shau-Kwaun; 洪筠婷; 張家銘; 邱筱涵; 詹銘煥; Hung, Yun Ting; Chang, Jia Ming; Chiu, Hsiao Han; Chan, Ming Huan
    [神經科學研究所] 學位論文 2010 蛋白激酶 CK2 在大鼠腦部之抗細胞凋亡機制的探討 張家銘
    [東亞研究] 期刊論文 2008-01 跨界投資中國及社會適應－台商、日商與韓商比較 張家銘; Chang, Chia-Ming
    [斯拉夫語文學系] 會議論文 2017-05 Influence of alignment uncertainty on homology modeling 張家銘; Chang, Jia-Ming; Notredame, Cedric
    [公共行政學系] 學位論文 1994 我國民意機關助理工作壓力之研究 張家銘; Chang, Cha Min
    [企業管理研究所（MBA學位學程）] 學位論文 2016 中信兄弟隊粉絲經營與球隊管理之策略分析 張家銘; Chang, Chia Ming
    [企業管理研究所（MBA學位學程）] 學位論文 2016 以精實創業探討新創事業平台化之歷程-以iCHEF為例 張家銘; Chang, Chia Ming

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