Reference: | Becker, C. and Gather, U. (2007) A note on the choice of the number of slices in sliced inverse regression. Technical Report, 475.
Biernacka, J.M., Geske, J., Jenkins, G.D., Colby, C., Rider, D.N., Karpyak, V.M., Choi, D. and Fridley, B.L. (2012) Genome-wide gene-set analysis for identification of pathways associated with alcohol dependence. International Journal of Neuropsychopharmacology, 16, 271-278.
Chang, S., Hursting, S.D., Contois, J.H., Strom, S.S., Yamamura, Y., Babaian, R.J., Troncoso, P., Scardino, P.T., Wheeler, T.M., Amos, C.I. and Spitz, M.R. (2001) Leptin and prostate cancer. The Prostate, 46, 62-67.
Chen, J., Pamuklar, Z., Spagnoli, A. and Torquati, A. (2012) Serum leptin levels are inversely correlated with omental gene expression of adiponectin and markedly decreased after gastric bypass surgery. Surg Endosc, 26, 1476-1480.
Cook, R.D. (1996) Graphics for regression with a binary response. Journal of the American Statistical Association, 91, 983-992.
Cook, R.D. and Lee, H. (1999) Dimension reduction in binary response regression. Journal of the American Statistical Association, 94, 1187-1200. Cook, R.D. and Weisberg, S. (1991) Discussion of ”Sliced Inverse Regression for Dimension Reduction.” Journal of the American Statistical Association, 86, 328-332.
Dinu, I., Potter, J.D., Mueller, T., Liu, Q., Adewale, A.J., Jhangri, G.S., Einecke, G., Famulski, K.S., Halloran, P. and Yasui, Y. (2007) Improving gene set analysis of microarray data by SAM-GS. Bioinformatics, 8, 242.
Dinu, I., Wang, X., Kelemen, L.E., Vatanpour, S. and Pyne, S. (2013) Linear combination test for gene set analysis of a continuous phenotype. BMC Bioinformatics, 14, 212.
Eid, M.A., Kumar, M.V., Iczkowski, K.A., Bostwick, D.G. and Tindall, D.J. (1998) Expression of early growth response genes in human prostate cancer. Cancer Res, 58, 2461-2468.
Gao, T., Han, Y., Yu, L., Ao, S., Li, Z. and Ji, J. (2014) CCNA2 is a prognostic biomarker for ER+ breast cancer and tamoxifen resistance. PLOS ONE, 9, 3.
Hsueh, H.M., Zhou, D.W., Tsai, C.A. (2013) Random forests-based differential analysis of gene sets for gene expression data. Gene, 518, 179-186.
Li, K.C. (1991) Sliced Inverse Regression for Dimension Reduction. Journal of the American Statistical Association, 86, 316-327.
Murphy, K.P. (2007) Conjugate bayesian analysis of the gaussian distribution. Technical report, University of British Columbia.
Riedel, K.S. (1991) A Sherman Morrison Woodbury identity for rank augmenting matrices with application to centering. SIAM J. MAT. ANAL., 12(1), 80-85.
Scha ̈fer, J. and Strimmer, K. (2005) A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Statistical Applications in Genetics and Molecular Biology, 4, 1.
Shao, Y. and Cook, R.D. and Weisberg, S. (2007) Marginal tests with sliced average variance estimation. Biometrika, 94, 285-296.
Singh, S.K., Grifson, J.J., Mavuduru, R.S., Agarwal, M.M., Mandal, A.K. and Jha, V. (2010) Serum leptin: a marker of prostate cancer irrespective of obesity. Cancer Biomarkers, 7, 11-15.
Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. and Mesirov, J.P. (2005) Gene set enrichment analysis:a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America, 102, 15545-15550.
Pang, H., Lin, A., Holford, M., Enerson, B.E., Lu, B., Lawton, M.P., Floyd, E. and Zhao, H. (2006) Pathway analysis using random forests classification and regression. Bioinformatics, 22, 2028-2036.
Terrasi, M., Riolfi, M., Ferla, R., Scolaro, L., Micciolo, R., Guidi, M. and Surmacz, E. (2009) Leptin and its receptor are overexpressed in brain tumors and correlate with the degree of malignancy. International Society of Neuropathology, 20(2), 481-489. Tusher, V.G., Tibshirani, R. and Chu, G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proceedings of the National Academy of Sciences of the United States of America, 98, 5116-5121.
Wang, X., Pyne, S. and Dinu, I. (2014) Gene set enrichment analysis for multiple continuous phenotypes. AIMSCS Research Report, No.: RR2014-05.
Wrann, C.D., Eguchi, J., Bozec, A., Xu, Z., Mikkelsen, T., Gimble, J., Nave, H., Wagner, E.F., Ong, S.E., Rosen, E.D. (2012) FOSL2 promotes leptin gene expression in human and mouse adipocytes. J Clin Invest, 122(3), 1010-1021.
Yan, X. and Sun, F. (2008) Testing gene set enrichment for subset of genes: Sub-GSE. BMC Bioinformatics, 9, 362.
Ye, C. and Eskin, E. (2007) Discovering tightly regulated and differentially expressed gene sets in whole genome expression data. Bioinformatics, 23 (2), 84-90.
徐碩亨、薛慧敏 (2013) Application of sufficient dimension reduction to global test.國立政治大學統計學系碩士論文,台北市。 |