政大機構典藏-National Chengchi University Institutional Repository(NCCUR):作者相關文件

2012

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

Chang, Jia-Ming; 張家銘; Notredame, Cedric; Taly, Jean-François; Tommaso, Paolo Di

[資訊科學系] 期刊論文

2012-03

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

張家銘; Chang, Jia-Ming; Notredame, Cedric; Taly, Jean-François; Tommaso, Paolo Di

[資訊科學系] 期刊論文

2014-10

Alignathon: A competitive assessment of whole genome alignment methods

張家銘

[資訊科學系] 期刊論文

2021-10

Circulating Exosomal miRNAs as Biomarkers in Epithelial Ovarian Cancer

張家銘; Chang, Jia-Ming; Shiao, Meng-Shin; Lertkhachonsuk, Arb-Aroon; Rermluk, Naparat; Jinawath, Natini

[資訊科學系] 期刊論文

2013-10

Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations

Chang, J.-M.; 張家銘; Su, E.C.-Y.; Notredame, C.; Tang, C.Y.; Hsu, W.-L.; Sung, T.-Y.; Erb, I.; Taly, J.-F.

[資訊科學系] 期刊論文

2015-10

Expression divergence of chemosensory genes between Drosophila sechellia and its sibling species and its implications for host shift

張家銘; Shiao, Meng-Shin; Chang, Jia-Ming; Fan, Wen-Lang; Lu, Mei-Yeh Jade; Notredame, Cedric; Fang, Shu

[資訊科學系] 期刊論文

2022-02

HiCmapTools: a tool to access HiC contact maps

張家銘; Chang, Jia-Ming; Weng, Yi-Fu; Chang, Wei-Ting; Lin, Fu-An; Cavalli, Giacomo

[資訊科學系] 會議論文

2019-07

Identification of alternative splicing characteristic associated with clear-cell ovarian cancer from paired normal and tumor tissues

張家銘; HUANG, YU-TING; SHIAO, MENG-SHIN; TSAI, CHEN-AN; LAN, KUER-YUAN; LIN, CHIEH-HSI; JIANAWATH, NATINI

[資訊科學系] 期刊論文

2011

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Lin, Hsin-Nan; Notredame, Cédric; Chang, Jia-Ming; Sung, Ting-Yi; Hsu, Wen-Lian; 張家銘

[資訊科學系] 期刊論文

2011-12

Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words

張家銘; Chang, Jia-Ming; Hsu*, Wen-Lian; Sung*, Ting-Yi; Notredame, Cédric; Lin, Hsin-Nan

[資訊科學系] 期刊論文

2019-02

Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability

張家銘; Chang, Jia-Ming; Floden, Evan W.; Herrero, Javier; Gascuel, Olivier; Tommaso, Paolo Di; Notredame, Cedric

[斯拉夫語文學系] 會議論文

2017-05

Influence of alignment uncertainty on homology modeling

張家銘; Chang, Jia-Ming; Notredame, Cedric

[資訊科學系] 期刊論文

2019-12

MS2CNN: Predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

張家銘; Chang, Jia-Ming; Lin, Yang Ming; Chen, Ching-Tai

[資訊科學系] 期刊論文

2015-11

Multiple sequence alignment modeling: methods and applications

張家銘; Chatzou, Maria; Magis, Cedrik; Chang, Jia-Ming; Kemena, Carsten; Bussotti, Giovanni; Erb, Ionas

[神經科學研究所] 會議論文

2018-03

NMDA Receptor Modulator Rescues Psychiatric Phenotypes in Mouse Model of Maternal Immune Activation

陳紹寬; Chen, Shau-Kwaun; 洪筠婷; 張家銘; 邱筱涵; 詹銘煥; Hung, Yun Ting; Chang, Jia Ming; Chiu, Hsiao Han; Chan, Ming Huan

[資訊科學系] 期刊論文

2022-12

Pattern recognition of topologically associating domains using deep learning

張家銘; Chang, Jia-Ming; Yang, Jhen Yuan

[資訊科學系] 期刊論文

2018-07

Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development

Ogiyama, Yuki; Schuettengruber, Bernd; Papadopoulos, Giorgio L.; 張家銘; Chang, Jia-Ming; Cavalli, Giacomo

[資訊科學系] 期刊論文

2012-12

Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing

Su, Emily Chia-Yu; 張家銘; Hsu, Wen-Lian; Sung, Ting-Yi; Cheng, Cheng-Wei; Chang, Jia-Ming

[資訊科學系] 期刊論文

2016-04

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases

張家銘; Floden, Evan; Tommaso, Paolo Di; Chatzou, Maria; Magis, Cedrik; Notredame, Cedric; Chang, Jia-Ming

[資訊科學系] 會議論文

2019-11

PSLCNN: Protein Subcellular Localization Prediction for Eukaryotes and Prokaryotes Using Deep Learning

張家銘; Chang, Jia-Ming; Chang, Che-Yu; Hsu, Tz-Wei

[資訊管理學系] 會議論文

2024-08

scGHSOM: Hierarchical clustering and visualization of single-cell and CRISPR data using growing hierarchical SOM

郁方; Yu, Fang; Wen, Shang-Jung; Chang, Jia-Ming

[資訊科學系] 期刊論文

2017-11

Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

張家銘; Cattoni, Diego I.; González, Inma; Chang, Jia-Ming; Sexton, Thomas; Marc, A. Marti-Renom; Bantignies, Frédéric

[資訊科學系] 期刊論文

2018-02

TADs are 3D structural units of higher-order chromosome organization in Drosophila

張家銘; Szabo, Quentin; Jost, Daniel; Chang, Jia-Ming; Cattoni, Diego I.

[資訊科學系] 期刊論文

2011-07

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

Chang, Jia-Ming; 張家銘; Notredame, Cedric; Taly, Jean-François; Montanyola, Alberto; Orobitg, Miquel; Xenarios, Ioannis; Moretti, Sebastien; Tommaso, Di; Paolo

[資訊科學系] 專書/專書篇章

2013-11

T-Coffee: tree-based consistency objective function for alignment evaluation

張家銘; Magis, Cedrik; Taly, Jean-François; Bussotti, Giovanni; Chang, Jia-Ming; Tommaso, Paolo Di; Erb, Ionas

[資訊科學系] 期刊論文

2014-06

TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction

張家銘; Chang, Jia-Ming; Tommaso, Paolo Di; Notredame, Cedric

[資訊科學系] 期刊論文

2015-07

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction

張家銘; Chang, Jia-Ming; Tommaso, Paolo Di; Lefort, Vincent; Gascuel, Olivier; Notredame, Cedric

[資訊科學系] 期刊論文

2019-11

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

張家銘; Chang, Jia-Ming; organization, CAFA3

[資訊科學系] 期刊論文

2023-02

Topological screen identifies hundreds of Cp190 and CTCF dependent Drosophila chromatin insulator elements

張家銘; Chang, Jia-Ming; Kahn, Tatyana G., Savitsky, Mikhail; Kuong, Chikuan; Jacquier, Caroline; Cavalli, Giacomo; Schwartz, Yuri B.

[資訊科學系] 期刊論文

2011-11

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures

Chang, Jia-Ming; 張家銘; Notredame, Cedric; Kemena, Carsten; Jose, Espinosa-Carrasco; Erb, Ionas; Tommaso, Paolo Di; Bussotti, Giovanni; Magis, Cedrik; Jean-Francois; Taly

[企業管理研究所（MBA學位學程）] 學位論文

2016

中信兄弟隊粉絲經營與球隊管理之策略分析

張家銘; Chang, Chia Ming

[企業管理研究所（MBA學位學程）] 學位論文

2016

以精實創業探討新創事業平台化之歷程-以iCHEF為例

張家銘; Chang, Chia Ming

[財務管理學系] 學位論文

2018

台灣上市櫃公司房地產價值對借款與投資決策之影響

張家銘

[第 28 屆國際資訊管理學術研討會] 會議論文

2017-05-13

應用決策樹於罹患慢性肝病預測之研究

陳振東; 邱冠榮; 李劭鎧; 張家銘

[公共行政學系] 學位論文

1994

我國民意機關助理工作壓力之研究

張家銘; Chang, Cha Min

[神經科學研究所] 學位論文

2010

蛋白激酶 CK2 在大鼠腦部之抗細胞凋亡機制的探討

張家銘

[東亞研究] 期刊論文

2008-01

跨界投資中國及社會適應－台商、日商與韓商比較

張家銘; Chang, Chia-Ming

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