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    題名: Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
    作者: 張家銘
    Cattoni, Diego I.;González, Inma;Chang, Jia-Ming;Sexton, Thomas;Marc, A. Marti-Renom;Bantignies, Frédéric
    貢獻者: 資科系
    日期: 2017-11
    上傳時間: 2018-04-17 15:49:36 (UTC+8)
    摘要: At the kilo- to mega-base pair scales, eukaryotic genomes are partitioned into self-interacting modules or topologically associated domains (TADs) that associate to form nuclear compartments. Here, we combined high-content super-resolution microscopies with state-of-the-art DNA labeling methods to reveal the variability in the multiscale organization of the Drosophila genome. We found that association frequencies within TADs and between TAD borders are below ~10%, independently of TAD size, epigenetic state, or cell type. Critically, despite this large heterogeneity, we were able to visualize nanometer-sized epigenetic domains at the single-cell level. In addition, absolute contact frequencies within and between TADs were to a large extent defined by genomic distance, higher-order chromosome architecture, and epigenetic identity. We propose that TADs and compartments are organized by multiple, small frequency, yet specific interactions that are regulated by epigenetics and transcriptional state.
    關聯: Nature communications
    資料類型: article
    DOI 連結: https://doi.org/10.1101/159814
    DOI: 10.1101/159814
    顯示於類別:[資訊科學系] 期刊論文

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