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Please use this identifier to cite or link to this item: https://nccur.lib.nccu.edu.tw/handle/140.119/116882

Title:	TADs are 3D structural units of higher-order chromosome organization in Drosophila
Authors:	張家銘 Szabo, Quentin Jost, Daniel Chang, Jia-Ming Cattoni, Diego I.
Contributors:	資科系
Date:	2018-02
Issue Date:	2018-04-17 15:42:19 (UTC+8)
Abstract:	Deciphering the rules of genome folding in the cell nucleus is essential to understand its functions. Recent chromosome conformation capture (Hi-C) studies have revealed that the genome is partitioned into topologically associating domains (TADs), which demarcate functional epigenetic domains defined by combinations of specific chromatin marks. However, whether TADs are true physical units in each cell nucleus or whether they reflect statistical frequencies of measured interactions within cell populations is unclear. Using a combination of Hi-C, three-dimensional (3D) fluorescent in situ hybridization, super-resolution microscopy, and polymer modeling, we provide an integrative view of chromatin folding in Drosophila. We observed that repressed TADs form a succession of discrete nanocompartments, interspersed by less condensed active regions. Single-cell analysis revealed a consistent TAD-based physical compartmentalization of the chromatin fiber, with some degree of heterogeneity in intra-TAD conformations and in cis and trans inter-TAD contact events. These results indicate that TADs are fundamental 3D genome units that engage in dynamic higher-order inter-TAD connections. This domain-based architecture is likely to play a major role in regulatory transactions during DNA-dependent processes.
Relation:	Science Advances, Vol. 4, no. 2, eaar8082
Data Type:	article
DOI 連結:	http://dx.doi.org/10.1126/sciadv.aar8082
DOI:	10.1126/sciadv.aar8082
Appears in Collections:	[資訊科學系] 期刊論文

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